torchcell.datamodels.schema.SgaAllelePerturbation
- class SgaAllelePerturbation(*, systematic_gene_name: str, perturbed_gene_name: str, gene_namespace: Literal['scerevisiae_s288c_sgd_systematic', 'scerevisiae_cenpk113_7d_locus_tag', 'scerevisiae_peter2018_pangenome_orf', 'ecoli_k12_mg1655_bnumber', 'ecoli_k12_bw25113_locus_tag', 'pputida_kt2440_locus_tag', 'ecoli_b_rel606_locus_tag', 'ecoli_k12_w3110_refseq_locus_tag'] = 'scerevisiae_s288c_sgd_systematic', identifier_mapping: DerivedIdentifierMapping | None = None, provenance: str = 'engineered', mechanism_so_id: str = 'SO:0001060', mechanism_so_name: str = 'sequence_variant', description: str = 'Allele compromised by amino acid substitution without more generic phenotypic information specified.', perturbation_type: Literal['allele'] = 'allele', allele_description: str = 'Ts Allele Perturbation information specific to SGA experiments.', strain_id: str, allele_perturbation_type: str = 'SGA')[source]
Bases:
AllelePerturbation,ModelStrictGeneric allele perturbation specific to SGA experiments.
- model_config: ClassVar[ConfigDict] = {'extra': 'forbid', 'frozen': True}
Configuration for the model, should be a dictionary conforming to [ConfigDict][pydantic.config.ConfigDict].