torchcell.ontology.print_schema_mappings

print_schema_mappings(schema_config_path: str = 'biocypher/config/torchcell_schema_config.yaml', compact: bool = True) → None[source]

Print a simple visualization of schema entities and their Biolink mappings.

Shows how torchcell schema entities map to Biolink ontology concepts via ‘is_a’ relationships, without fetching the full ontology.

Parameters:

  • schema_config_path – Path to the schema config YAML file relative to project root

  • compact – If True, use compact format; if False, use expanded tree format

Example

>>> from torchcell.ontology import print_schema_mappings
>>> print_schema_mappings()
>>> print_schema_mappings(compact=False)  # Expanded format