torchcell.ontology.print_ontology_structure

print_ontology_structure(schema_config_path: str = 'biocypher/config/torchcell_schema_config.yaml', full: bool = False, to_disk: str | None = None) → None[source]

Print the BioCypher ontology structure from schema config.

Parameters:

  • schema_config_path – Path to the schema config YAML file relative to project root

  • full – If True, show complete ontology; if False, show only schema-relevant parts

  • to_disk – Optional path to save GraphML file for external visualization tools

Example

>>> from torchcell.ontology import print_ontology_structure
>>> # Print focused view of your schema
>>> print_ontology_structure()
>>> # Print complete ontology
>>> print_ontology_structure(full=True)
>>> # Export for visualization in Cytoscape/Gephi
>>> print_ontology_structure(to_disk="path/to/output")