torchcell.metabolism.parameters.load_measured_concentrations

load_measured_concentrations(model_dir: str) → dict[str, float]

ChEBI id -> measured intracellular concentration in molar, from YMDB.

YMDBconcentrations.csv reports uM with a mean, max and min plus the verbatim per-study string. The mean is used; the spread is kept in the file and is the obvious place to draw an uncertainty from later. These anchor the learned \(\ln c\) of the anchored thermodynamic mode, which otherwise floats anywhere in its six-order-of- magnitude box.